MidnightBSD Magus

science/R-cran-etm

Empirical Transition Matrix

Flavor Version Run OSVersion Arch License Restricted Build Fetch Test Scan
1.1.1_1 642 4.1 amd64 mit 0 fail pass untested untested

License Permissions: dist-mirror dist-sell pkg-mirror pkg-sell auto-accept

Events

Machine Phase Type Time Message
m4164b fetch info 2026-07-07 12:53:56.479091 Fetch Started
m4164b fetch pass 2026-07-07 12:54:01.185874 Fetch complete.
m4164b build info 2026-07-18 07:14:21.072116 Build Started
m4164b build warn 2026-07-18 07:17:54.532031 MASTER_SITES contains non-HTTPS URLs: http://cran.utstat.utoronto.ca/src/contrib/, http://cran.utstat.utoronto.ca/src/contrib/Archive/etm/
m4164b build fail 2026-07-18 07:17:54.546934 make fake returned non-zero: 1
m4164b build fail 2026-07-18 07:17:54.634957 Build complete.

Build Log

===>  Faking install for R-cran-etm-1.1.1_1
===>   Generating temporary packing list
* installing *source* package 'etm' ...
** package 'etm' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'MidnightBSD clang version 19.1.7 (https://github.com/llvm/llvm-project.git llvmorg-19.1.7-0-gcd708029e0b2)'
using C++ compiler: 'MidnightBSD clang version 19.1.7 (https://github.com/llvm/llvm-project.git llvmorg-19.1.7-0-gcd708029e0b2)'
c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -isystem /usr/local/include    -fpic  -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include    -c cov_aj.cc -o cov_aj.o
c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -isystem /usr/local/include    -fpic  -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include    -c gen_msm.cpp -o gen_msm.o
cc -I"/usr/local/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -isystem /usr/local/include    -fpic  -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing   -c init.c -o init.o
c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -isystem /usr/local/include    -fpic  -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include    -c los_etm.cpp -o los_etm.o
c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -isystem /usr/local/include    -fpic  -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include    -c utils.cpp -o utils.o
c++ -std=gnu++17 -shared -L/usr/local/lib/R/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc14 -L/usr/local/lib/gcc14 -B/usr/local/bin -fstack-protector-strong -o etm.so cov_aj.o gen_msm.o init.o los_etm.o utils.o -L/usr/local/lib/R/lib -lRlapack -g -L/usr/local/lib/R/lib -lRblas -L/usr/local/bin -L/usr/local/lib/gcc14/gcc/x86_64-portbld-freebsd12.4/14.2.0 -lgfortran -lm -lssp_nonshared -lquadmath -L/usr/local/lib/R/lib -lR
installing to /magus/work/usr/mports/science/R-cran-etm/work/fake-inst-amd64/usr/local/lib/R/library/00LOCK-etm/00new/etm/libs
** R
** data
** inst
** tests
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for 'etm' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/magus/work/usr/mports/science/R-cran-etm/work/fake-inst-amd64/usr/local/lib/R/library/00LOCK-etm/00new/etm/libs/etm.so':
  /magus/work/usr/mports/science/R-cran-etm/work/fake-inst-amd64/usr/local/lib/R/library/00LOCK-etm/00new/etm/libs/etm.so: Undefined symbol "backtrace_symbols"
Error: loading failed
Execution halted
ERROR: loading failed
* removing '/magus/work/usr/mports/science/R-cran-etm/work/fake-inst-amd64/usr/local/lib/R/library/etm'
*** Error code 1

Stop.
make[1]: stopped in /usr/mports/science/R-cran-etm
*** Error code 1

Stop.
make: stopped in /usr/mports/science/R-cran-etm

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