MidnightBSD Magus

biology/rubygem-bio

Integrated environment for Bioinformatics written in Ruby

Flavor Version Run OSVersion Arch License Restricted Build Fetch Test Scan
2.0.5 642 4.1 amd64 bsd2 ruby 0 pass pass pass warn

License Permissions: dist-mirror dist-sell pkg-mirror pkg-sell auto-accept

Events

Machine Phase Type Time Message
m4164b fetch info 2026-07-09 19:21:24.583554 Fetch Started
m4164b fetch pass 2026-07-09 19:21:26.350901 Fetch complete.
m4164b build info 2026-07-09 19:21:26.554958 Build Started
m4164b build pass 2026-07-09 19:22:35.736556 Build complete.
m4164b scan info 2026-07-12 12:20:10.829441 Scan Started
m4164b scan fail 2026-07-12 12:20:10.858393 Virus scan found a problem.
m4164b scan internal 2026-07-12 12:20:10.887599 Exception thrown: open3: exec of yara /usr/magus/slave-data/mports/Tools/magus/yara/mports-shell.yar /usr/mports/biology/rubygem-bio/Makefile failed: No such file or directory at /usr/magus/slave-data/mports/Tools/magus/slave/../../lib/Magus/App/Slave/Worker.pm line 931.
m4164b scan info 2026-07-20 05:30:27.094595 Scan Started
m4164b scan info 2026-07-20 05:30:51.37991 Virus scan passed.
m4164b scan info 2026-07-20 05:30:51.417153 YARA scan passed.
m4164b scan warn 2026-07-20 05:30:52.311185 MASTER_SITES changed in git history; review upstream source location.
m4164b scan warn 2026-07-20 05:30:52.335142 Scan complete.
m4164b test info 2026-07-21 09:47:40.576601 Test Started
m4164b test pass 2026-07-21 09:48:45.041946 Test complete.

scan Log

== ClamAV package scan ==
/mnt/magus/packages/642/rubygem-bio-2.0.5.mport: OK

== YARA port-file scan ==
No YARA matches.

== Source integrity scan ==
Compared biology/rubygem-bio between 34041ae17839de397996a522bd5e040c569997d8 and 86b344d030224f7ddfeca7b0550a6fea85207878.
Changed files:
  biology/rubygem-bio/Makefile
  biology/rubygem-bio/distinfo
  biology/rubygem-bio/pkg-descr
Warnings:
  SourceIntegrityMasterSitesChanged: MASTER_SITES changed in git history; review upstream source location.

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LLM Analysis