MidnightBSD Magusbiology/ruby-bio
Integrated environment for Bioinformatics written in Ruby
| Flavor | Version | Run | OSVersion | Arch | License | Restricted | Build | Fetch | Test | Scan | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1.5.1 | 642 | 4.1 | amd64 | gpl2 ruby | 0 | warn | pass | pass | warn |
License Permissions: dist-mirror dist-sell pkg-mirror pkg-sell auto-accept
Events
| Machine | Phase | Type | Time | Message |
|---|---|---|---|---|
| m4164b | build | info | 2026-07-09 07:01:46.98507 | Build Started |
| m4164b | build | warn | 2026-07-09 07:02:16.444482 | MASTER_SITES contains non-HTTPS URLs: http://bioruby.org/archive/ |
| m4164b | build | warn | 2026-07-09 07:02:18.049708 | Build complete. |
| m4164b | fetch | info | 2026-07-06 05:31:06.724242 | Fetch Started |
| m4164b | fetch | pass | 2026-07-06 05:31:08.502797 | Fetch complete. |
| m4164b | scan | info | 2026-07-12 12:20:10.359475 | Scan Started |
| m4164b | scan | fail | 2026-07-12 12:20:10.389106 | Virus scan found a problem. |
| m4164b | scan | internal | 2026-07-12 12:20:10.41682 | Exception thrown: open3: exec of yara /usr/magus/slave-data/mports/Tools/magus/yara/mports-shell.yar /usr/mports/biology/ruby-bio/Makefile failed: No such file or directory at /usr/magus/slave-data/mports/Tools/magus/slave/../../lib/Magus/App/Slave/Worker.pm line 931. |
| m4164b | scan | info | 2026-07-20 05:30:17.976552 | Scan Started |
| m4164b | scan | info | 2026-07-20 05:30:39.565584 | Virus scan passed. |
| m4164b | scan | info | 2026-07-20 05:30:39.602745 | YARA scan passed. |
| m4164b | scan | warn | 2026-07-20 05:30:40.035724 | MASTER_SITES contains domain not in source allowlist: bioruby.org |
| m4164b | scan | warn | 2026-07-20 05:30:40.062067 | Scan complete. |
| m4164b | test | info | 2026-07-21 09:47:12.688676 | Test Started |
| m4164b | test | pass | 2026-07-21 09:47:40.210361 | Test complete. |
scan Log
== ClamAV package scan == /mnt/magus/packages/642/ruby32-bio-1.5.1.mport: OK == YARA port-file scan == No YARA matches. == Source integrity scan == Compared biology/ruby-bio between 4d6aa08712eeb49136adedf78389c894e3691ea7 and 7b9b5e873cd6487aefeb43489c67ae5c907639f0. Changed files: biology/ruby-bio/Makefile Warnings: SourceIntegrityUnknownMasterSiteDomain: MASTER_SITES contains domain not in source allowlist: bioruby.org
Links
Depends On
- lang/ruby32 (build)
- lang/ruby32 (extract)
- lang/ruby32 (patch)
- lang/ruby32 (run)
Depend Of
NothingCategories
CVEs
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