MidnightBSD Magus

math/R-cran-zoo

S3 Infrastructure for Regular and Irregular Time Series

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Events

Log

===>  Testing for R-cran-zoo-1.8.14
* using log directory '/magus/work/usr/mports/math/R-cran-zoo/work/zoo.Rcheck'
* using R version 4.4.0 (2024-04-24)
* using platform: amd64-portbld-midnightbsd4.0
* R was compiled by
    MidnightBSD clang version 19.1.7 (https://github.com/llvm/llvm-project.git llvmorg-19.1.7-0-gcd708029e0b2)
    GNU Fortran (MidnightBSD Ports Collection) 13.3.0
* running under: MidnightBSD m4064b 4.0 MidnightBSD 4.0 stable/4.0-n13677-4ab7eb6694 GENERIC amd64
* using session charset: ASCII
* using options '--no-manual --no-build-vignettes'
* checking for file 'zoo/DESCRIPTION' ... OK
* this is package 'zoo' version '1.8-14'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages suggested but not available for checking:
  'AER', 'coda', 'chron', 'ggplot2', 'mondate', 'scales', 'stinepack',
  'strucchange', 'timeDate', 'timeSeries', 'tinyplot', 'tis',
  'tseries', 'xts'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'zoo' can be installed ... OK
* used C compiler: 'MidnightBSD clang version 19.1.7 (https://github.com/llvm/llvm-project.git llvmorg-19.1.7-0-gcd708029e0b2)'
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: 'chron', 'tseries', 'coda', 'tis', 'xts', 'ggplot2', 'stinepack', 'tinyplot'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking differences from 'zoo-Ex.Rout' to 'zoo-Ex.Rout.save' ... OK

150,151c150,154
< Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
<   there is no package called 'chron'
---
>             A  B
> 1970-01-01 11 11
> 1970-02-01 NA NA
> 1970-03-01 13 13
> 1970-04-01 14 14
268a272,274
> 
> detaching 'package:chron'
> 
533,534d538
< Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
<   there is no package called 'ggplot2'
538a543,545
> 
> detaching 'package:scales', 'package:ggplot2'
> 
1180,1181c1187,1188
< Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
<   there is no package called 'chron'
---
> (01/01/00 10:10:00) (01/01/00 10:20:00) (01/01/00 10:30:00) 
>                 1.0                 2.0                 2.5 
1185a1193,1195
> 
> detaching 'package:chron'
> 
2372,2373d2381
< Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
<   there is no package called 'tinyplot'
2377a2386,2388
> 
> detaching 'package:tinyplot'
> 
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'as.Date.R'
 ERROR
Running the tests in 'tests/as.Date.R' failed.
Last 13 lines of output:
  > as.Date(10957, origin = "1970-01-01")
  [1] "2000-01-01"
  > as.Date("2000-01-01")
  [1] "2000-01-01"
  > as.Date(as.POSIXct("2000-01-01 00:00:00 GMT", tz = "GMT"))
  [1] "2000-01-01"
  > as.Date(as.POSIXlt("2000-01-01 00:00:00 GMT", tz = "GMT"))
  [1] "2000-01-01"
  > as.Date(NA)
  [1] NA
  > 
  > ## for chron objects
  > library("chron")
  Error in library("chron") : there is no package called 'chron'
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ...
  'zoo-design.Rnw'... OK
  'zoo-faq.Rnw'... failed
  'zoo-quickref.Rnw'... failed
  'zoo-read.Rnw'... failed
  'zoo.Rnw'... failed
 WARNING
Errors in running code in vignettes:
when running code in 'zoo-faq.Rnw'
  ...

> Lines <- "1|BHARTIARTL|EQ|18:15:05|600|1\n2|BHARTIARTL|EQ|18:15:05|600|99\n3|GLENMARK|EQ|18:15:05|238.1|5\n4|HINDALCO|EQ|18:15:05|43.75|100\n5|BHART ..." ... [TRUNCATED] 

> library("zoo")

> library("chron")

  When sourcing 'zoo-faq.R':
Error: there is no package called 'chron'
Execution halted
when running code in 'zoo-quickref.Rnw'
  ...
The following objects are masked from 'package:base':

    as.Date, as.Date.numeric


> library("tseries")

  When sourcing 'zoo-quickref.R':
Error: there is no package called 'tseries'
Execution halted
when running code in 'zoo-read.Rnw'
  ...
The following objects are masked from 'package:base':

    as.Date, as.Date.numeric


> library("chron")

  When sourcing 'zoo-read.R':
Error: there is no package called 'chron'
Execution halted
when running code in 'zoo.Rnw'
  ...
The following objects are masked from 'package:base':

    as.Date, as.Date.numeric


> library("tseries")

  When sourcing 'zoo.R':
Error: there is no package called 'tseries'
Execution halted

* checking re-building of vignette outputs ... SKIPPED
* DONE

Status: 1 ERROR, 1 WARNING, 2 NOTEs
See
  '/magus/work/usr/mports/math/R-cran-zoo/work/zoo.Rcheck/00check.log'
for details.

*** Error code 1

Stop.
make: stopped in /usr/mports/math/R-cran-zoo